[MOAB/FMDB] loading the same distributed mesh
|Assignee:||Seegyoung Seol||% Done:|
- This is needed to run MOAB_iMeshP test with both MOAB and FMDB.
- The mesh file will be of different format
#1 Updated by Seegyoung Seol about 6 years ago
- Status changed from New to In Progress
- Assignee set to Seegyoung Seol
- Start date changed from 06/19/2011 to 08/09/2011
The purpose of this activity is two-fold
- providing FMDB-readable 4-part distributed mesh with topology of what MOAB_iMeshP_test constructs
- and availing MOAB_iMeshP_test to run either with MOAB or FMDB
This implies that MOAB_iMeshP_test needs to be modified to load distributed 4-part meshes instead of constructing the 4-part mesh from the scratch, if needed. (Tim, correct me if I am wrong)
#2 Updated by Seegyoung Seol almost 6 years ago
FMDB-readable 6-part, 24 quad distributed "sms" mesh files which mimic the mesh constributed by MOAB_iMeshP_unitTest.cc are downloadable from iMeshP/data.
However, MOAB iMeshP test needs at least two modifications to run with FMDB:
- removing "create_mesh" call
- getting mesh file name from input argument
In addition, further investigation in MOAB iMeshP test is needed to run it with FMDB to eliminate any non-general testing which is specific to this 6-part, 24 quad mesh or something beyond iMeshP specifications/agreement.
My speculation is, with MOAB-readable, 6-part, 24quad mesh files available, iMeshP_unitTest.cc can run either with MOAB or FMDB with slight modification in mesh loading options.
#3 Updated by Mark Miller over 5 years ago
- Status changed from In Progress to Resolved
I adjusted MOAB_iMeshP_unitTest to accept input from file instead
always creating mesh from an new instance and then saving the file.
I manually ran the test on 6 processors and saved the native,
MOAB file to data/MOAB_iMeshP_test_file.h5m and then tested
running the test with this file and it it indeed works like
mpirun -np 6 MOAB_iMeshP_unitTest -i ../../data/MOAB_iMeshP_test_file.h5m
...and that runs to completion successfully with no errors.
I also compiled MOAB_iMeshP_unitTest against FMDB 1.3.6 and
tried running with FMDB's input file like so...
mpirun -np 6 iMeshP_unitTest ../../data/24quad_p.sms
...which should cause it to read all 24quad_pi.sms files.
However, that test appears to hang.
Finally, I compiled and linked iMeshP_unitTest against MOAB and
tried to run it like so...
mpirun -np 6 iMeshP_unitTest ../../data/MOAB_iMeshP_test_file.h5m
and that immedately aborted...
rank 5 in job 44 itaps_53503 caused collective abort of all ranks
exit status of rank 5: return code 1
rank 4 in job 44 itaps_53503 caused collective abort of all ranks
exit status of rank 4: return code 1
rank 3 in job 44 itaps_53503 caused collective abort of all ranks
exit status of rank 3: return code 1
rank 1 in job 44 itaps_53503 caused collective abort of all ranks
exit status of rank 1: return code 1
rank 0 in job 44 itaps_53503 caused collective abort of all ranks
exit status of rank 0: return code 1
So, as far as cross-testing of MOAB and FMDB's unit tests against
the implementations, I have taken things as far as I can.
I am going to file a couple of tickets for these new test failures.